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Diffstat (limited to 'thirdparty1/linux/include/opencv2/flann/lsh_table.h')
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diff --git a/thirdparty1/linux/include/opencv2/flann/lsh_table.h b/thirdparty1/linux/include/opencv2/flann/lsh_table.h new file mode 100644 index 0000000..8ef2bd3 --- /dev/null +++ b/thirdparty1/linux/include/opencv2/flann/lsh_table.h @@ -0,0 +1,492 @@ +/*********************************************************************** + * Software License Agreement (BSD License) + * + * Copyright 2008-2009 Marius Muja (mariusm@cs.ubc.ca). All rights reserved. + * Copyright 2008-2009 David G. Lowe (lowe@cs.ubc.ca). All rights reserved. + * + * THE BSD LICENSE + * + * Redistribution and use in source and binary forms, with or without + * modification, are permitted provided that the following conditions + * are met: + * + * 1. Redistributions of source code must retain the above copyright + * notice, this list of conditions and the following disclaimer. + * 2. Redistributions in binary form must reproduce the above copyright + * notice, this list of conditions and the following disclaimer in the + * documentation and/or other materials provided with the distribution. + * + * THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR + * IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES + * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. + * IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT, + * INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT + * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, + * DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY + * THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT + * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF + * THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + *************************************************************************/ + +/*********************************************************************** + * Author: Vincent Rabaud + *************************************************************************/ + +#ifndef OPENCV_FLANN_LSH_TABLE_H_ +#define OPENCV_FLANN_LSH_TABLE_H_ + +#include <algorithm> +#include <iostream> +#include <iomanip> +#include <limits.h> +// TODO as soon as we use C++0x, use the code in USE_UNORDERED_MAP +#ifdef __GXX_EXPERIMENTAL_CXX0X__ +# define USE_UNORDERED_MAP 1 +#else +# define USE_UNORDERED_MAP 0 +#endif +#if USE_UNORDERED_MAP +#include <unordered_map> +#else +#include <map> +#endif +#include <math.h> +#include <stddef.h> + +#include "dynamic_bitset.h" +#include "matrix.h" + +namespace cvflann +{ + +namespace lsh +{ + +//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +/** What is stored in an LSH bucket + */ +typedef uint32_t FeatureIndex; +/** The id from which we can get a bucket back in an LSH table + */ +typedef unsigned int BucketKey; + +/** A bucket in an LSH table + */ +typedef std::vector<FeatureIndex> Bucket; + +//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +/** POD for stats about an LSH table + */ +struct LshStats +{ + std::vector<unsigned int> bucket_sizes_; + size_t n_buckets_; + size_t bucket_size_mean_; + size_t bucket_size_median_; + size_t bucket_size_min_; + size_t bucket_size_max_; + size_t bucket_size_std_dev; + /** Each contained vector contains three value: beginning/end for interval, number of elements in the bin + */ + std::vector<std::vector<unsigned int> > size_histogram_; +}; + +/** Overload the << operator for LshStats + * @param out the streams + * @param stats the stats to display + * @return the streams + */ +inline std::ostream& operator <<(std::ostream& out, const LshStats& stats) +{ + int w = 20; + out << "Lsh Table Stats:\n" << std::setw(w) << std::setiosflags(std::ios::right) << "N buckets : " + << stats.n_buckets_ << "\n" << std::setw(w) << std::setiosflags(std::ios::right) << "mean size : " + << std::setiosflags(std::ios::left) << stats.bucket_size_mean_ << "\n" << std::setw(w) + << std::setiosflags(std::ios::right) << "median size : " << stats.bucket_size_median_ << "\n" << std::setw(w) + << std::setiosflags(std::ios::right) << "min size : " << std::setiosflags(std::ios::left) + << stats.bucket_size_min_ << "\n" << std::setw(w) << std::setiosflags(std::ios::right) << "max size : " + << std::setiosflags(std::ios::left) << stats.bucket_size_max_; + + // Display the histogram + out << std::endl << std::setw(w) << std::setiosflags(std::ios::right) << "histogram : " + << std::setiosflags(std::ios::left); + for (std::vector<std::vector<unsigned int> >::const_iterator iterator = stats.size_histogram_.begin(), end = + stats.size_histogram_.end(); iterator != end; ++iterator) out << (*iterator)[0] << "-" << (*iterator)[1] << ": " << (*iterator)[2] << ", "; + + return out; +} + + +//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +/** Lsh hash table. As its key is a sub-feature, and as usually + * the size of it is pretty small, we keep it as a continuous memory array. + * The value is an index in the corpus of features (we keep it as an unsigned + * int for pure memory reasons, it could be a size_t) + */ +template<typename ElementType> +class LshTable +{ +public: + /** A container of all the feature indices. Optimized for space + */ +#if USE_UNORDERED_MAP + typedef std::unordered_map<BucketKey, Bucket> BucketsSpace; +#else + typedef std::map<BucketKey, Bucket> BucketsSpace; +#endif + + /** A container of all the feature indices. Optimized for speed + */ + typedef std::vector<Bucket> BucketsSpeed; + + /** Default constructor + */ + LshTable() + { + } + + /** Default constructor + * Create the mask and allocate the memory + * @param feature_size is the size of the feature (considered as a ElementType[]) + * @param key_size is the number of bits that are turned on in the feature + */ + LshTable(unsigned int feature_size, unsigned int key_size) + { + (void)feature_size; + (void)key_size; + std::cerr << "LSH is not implemented for that type" << std::endl; + assert(0); + } + + /** Add a feature to the table + * @param value the value to store for that feature + * @param feature the feature itself + */ + void add(unsigned int value, const ElementType* feature) + { + // Add the value to the corresponding bucket + BucketKey key = (lsh::BucketKey)getKey(feature); + + switch (speed_level_) { + case kArray: + // That means we get the buckets from an array + buckets_speed_[key].push_back(value); + break; + case kBitsetHash: + // That means we can check the bitset for the presence of a key + key_bitset_.set(key); + buckets_space_[key].push_back(value); + break; + case kHash: + { + // That means we have to check for the hash table for the presence of a key + buckets_space_[key].push_back(value); + break; + } + } + } + + /** Add a set of features to the table + * @param dataset the values to store + */ + void add(Matrix<ElementType> dataset) + { +#if USE_UNORDERED_MAP + buckets_space_.rehash((buckets_space_.size() + dataset.rows) * 1.2); +#endif + // Add the features to the table + for (unsigned int i = 0; i < dataset.rows; ++i) add(i, dataset[i]); + // Now that the table is full, optimize it for speed/space + optimize(); + } + + /** Get a bucket given the key + * @param key + * @return + */ + inline const Bucket* getBucketFromKey(BucketKey key) const + { + // Generate other buckets + switch (speed_level_) { + case kArray: + // That means we get the buckets from an array + return &buckets_speed_[key]; + break; + case kBitsetHash: + // That means we can check the bitset for the presence of a key + if (key_bitset_.test(key)) return &buckets_space_.find(key)->second; + else return 0; + break; + case kHash: + { + // That means we have to check for the hash table for the presence of a key + BucketsSpace::const_iterator bucket_it, bucket_end = buckets_space_.end(); + bucket_it = buckets_space_.find(key); + // Stop here if that bucket does not exist + if (bucket_it == bucket_end) return 0; + else return &bucket_it->second; + break; + } + } + return 0; + } + + /** Compute the sub-signature of a feature + */ + size_t getKey(const ElementType* /*feature*/) const + { + std::cerr << "LSH is not implemented for that type" << std::endl; + assert(0); + return 1; + } + + /** Get statistics about the table + * @return + */ + LshStats getStats() const; + +private: + /** defines the speed fo the implementation + * kArray uses a vector for storing data + * kBitsetHash uses a hash map but checks for the validity of a key with a bitset + * kHash uses a hash map only + */ + enum SpeedLevel + { + kArray, kBitsetHash, kHash + }; + + /** Initialize some variables + */ + void initialize(size_t key_size) + { + const size_t key_size_lower_bound = 1; + //a value (size_t(1) << key_size) must fit the size_t type so key_size has to be strictly less than size of size_t + const size_t key_size_upper_bound = (std::min)(sizeof(BucketKey) * CHAR_BIT + 1, sizeof(size_t) * CHAR_BIT); + if (key_size < key_size_lower_bound || key_size >= key_size_upper_bound) + { + CV_Error(cv::Error::StsBadArg, cv::format("Invalid key_size (=%d). Valid values for your system are %d <= key_size < %d.", (int)key_size, (int)key_size_lower_bound, (int)key_size_upper_bound)); + } + + speed_level_ = kHash; + key_size_ = (unsigned)key_size; + } + + /** Optimize the table for speed/space + */ + void optimize() + { + // If we are already using the fast storage, no need to do anything + if (speed_level_ == kArray) return; + + // Use an array if it will be more than half full + if (buckets_space_.size() > ((size_t(1) << key_size_) / 2)) { + speed_level_ = kArray; + // Fill the array version of it + buckets_speed_.resize(size_t(1) << key_size_); + for (BucketsSpace::const_iterator key_bucket = buckets_space_.begin(); key_bucket != buckets_space_.end(); ++key_bucket) buckets_speed_[key_bucket->first] = key_bucket->second; + + // Empty the hash table + buckets_space_.clear(); + return; + } + + // If the bitset is going to use less than 10% of the RAM of the hash map (at least 1 size_t for the key and two + // for the vector) or less than 512MB (key_size_ <= 30) + if (((std::max(buckets_space_.size(), buckets_speed_.size()) * CHAR_BIT * 3 * sizeof(BucketKey)) / 10 + >= (size_t(1) << key_size_)) || (key_size_ <= 32)) { + speed_level_ = kBitsetHash; + key_bitset_.resize(size_t(1) << key_size_); + key_bitset_.reset(); + // Try with the BucketsSpace + for (BucketsSpace::const_iterator key_bucket = buckets_space_.begin(); key_bucket != buckets_space_.end(); ++key_bucket) key_bitset_.set(key_bucket->first); + } + else { + speed_level_ = kHash; + key_bitset_.clear(); + } + } + + /** The vector of all the buckets if they are held for speed + */ + BucketsSpeed buckets_speed_; + + /** The hash table of all the buckets in case we cannot use the speed version + */ + BucketsSpace buckets_space_; + + /** What is used to store the data */ + SpeedLevel speed_level_; + + /** If the subkey is small enough, it will keep track of which subkeys are set through that bitset + * That is just a speedup so that we don't look in the hash table (which can be mush slower that checking a bitset) + */ + DynamicBitset key_bitset_; + + /** The size of the sub-signature in bits + */ + unsigned int key_size_; + + // Members only used for the unsigned char specialization + /** The mask to apply to a feature to get the hash key + * Only used in the unsigned char case + */ + std::vector<size_t> mask_; +}; + +//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// +// Specialization for unsigned char + +template<> +inline LshTable<unsigned char>::LshTable(unsigned int feature_size, unsigned int subsignature_size) +{ + initialize(subsignature_size); + // Allocate the mask + mask_ = std::vector<size_t>((size_t)ceil((float)(feature_size * sizeof(char)) / (float)sizeof(size_t)), 0); + + // A bit brutal but fast to code + std::vector<size_t> indices(feature_size * CHAR_BIT); + for (size_t i = 0; i < feature_size * CHAR_BIT; ++i) indices[i] = i; + std::random_shuffle(indices.begin(), indices.end()); + + // Generate a random set of order of subsignature_size_ bits + for (unsigned int i = 0; i < key_size_; ++i) { + size_t index = indices[i]; + + // Set that bit in the mask + size_t divisor = CHAR_BIT * sizeof(size_t); + size_t idx = index / divisor; //pick the right size_t index + mask_[idx] |= size_t(1) << (index % divisor); //use modulo to find the bit offset + } + + // Set to 1 if you want to display the mask for debug +#if 0 + { + size_t bcount = 0; + BOOST_FOREACH(size_t mask_block, mask_){ + out << std::setw(sizeof(size_t) * CHAR_BIT / 4) << std::setfill('0') << std::hex << mask_block + << std::endl; + bcount += __builtin_popcountll(mask_block); + } + out << "bit count : " << std::dec << bcount << std::endl; + out << "mask size : " << mask_.size() << std::endl; + return out; + } +#endif +} + +/** Return the Subsignature of a feature + * @param feature the feature to analyze + */ +template<> +inline size_t LshTable<unsigned char>::getKey(const unsigned char* feature) const +{ + // no need to check if T is dividable by sizeof(size_t) like in the Hamming + // distance computation as we have a mask + const size_t* feature_block_ptr = reinterpret_cast<const size_t*> ((const void*)feature); + + // Figure out the subsignature of the feature + // Given the feature ABCDEF, and the mask 001011, the output will be + // 000CEF + size_t subsignature = 0; + size_t bit_index = 1; + + for (std::vector<size_t>::const_iterator pmask_block = mask_.begin(); pmask_block != mask_.end(); ++pmask_block) { + // get the mask and signature blocks + size_t feature_block = *feature_block_ptr; + size_t mask_block = *pmask_block; + while (mask_block) { + // Get the lowest set bit in the mask block + size_t lowest_bit = mask_block & (-(ptrdiff_t)mask_block); + // Add it to the current subsignature if necessary + subsignature += (feature_block & lowest_bit) ? bit_index : 0; + // Reset the bit in the mask block + mask_block ^= lowest_bit; + // increment the bit index for the subsignature + bit_index <<= 1; + } + // Check the next feature block + ++feature_block_ptr; + } + return subsignature; +} + +template<> +inline LshStats LshTable<unsigned char>::getStats() const +{ + LshStats stats; + stats.bucket_size_mean_ = 0; + if ((buckets_speed_.empty()) && (buckets_space_.empty())) { + stats.n_buckets_ = 0; + stats.bucket_size_median_ = 0; + stats.bucket_size_min_ = 0; + stats.bucket_size_max_ = 0; + return stats; + } + + if (!buckets_speed_.empty()) { + for (BucketsSpeed::const_iterator pbucket = buckets_speed_.begin(); pbucket != buckets_speed_.end(); ++pbucket) { + stats.bucket_sizes_.push_back((lsh::FeatureIndex)pbucket->size()); + stats.bucket_size_mean_ += pbucket->size(); + } + stats.bucket_size_mean_ /= buckets_speed_.size(); + stats.n_buckets_ = buckets_speed_.size(); + } + else { + for (BucketsSpace::const_iterator x = buckets_space_.begin(); x != buckets_space_.end(); ++x) { + stats.bucket_sizes_.push_back((lsh::FeatureIndex)x->second.size()); + stats.bucket_size_mean_ += x->second.size(); + } + stats.bucket_size_mean_ /= buckets_space_.size(); + stats.n_buckets_ = buckets_space_.size(); + } + + std::sort(stats.bucket_sizes_.begin(), stats.bucket_sizes_.end()); + + // BOOST_FOREACH(int size, stats.bucket_sizes_) + // std::cout << size << " "; + // std::cout << std::endl; + stats.bucket_size_median_ = stats.bucket_sizes_[stats.bucket_sizes_.size() / 2]; + stats.bucket_size_min_ = stats.bucket_sizes_.front(); + stats.bucket_size_max_ = stats.bucket_sizes_.back(); + + // TODO compute mean and std + /*float mean, stddev; + stats.bucket_size_mean_ = mean; + stats.bucket_size_std_dev = stddev;*/ + + // Include a histogram of the buckets + unsigned int bin_start = 0; + unsigned int bin_end = 20; + bool is_new_bin = true; + for (std::vector<unsigned int>::iterator iterator = stats.bucket_sizes_.begin(), end = stats.bucket_sizes_.end(); iterator + != end; ) + if (*iterator < bin_end) { + if (is_new_bin) { + stats.size_histogram_.push_back(std::vector<unsigned int>(3, 0)); + stats.size_histogram_.back()[0] = bin_start; + stats.size_histogram_.back()[1] = bin_end - 1; + is_new_bin = false; + } + ++stats.size_histogram_.back()[2]; + ++iterator; + } + else { + bin_start += 20; + bin_end += 20; + is_new_bin = true; + } + + return stats; +} + +// End the two namespaces +} +} + +//////////////////////////////////////////////////////////////////////////////////////////////////////////////////////// + +#endif /* OPENCV_FLANN_LSH_TABLE_H_ */ |