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authorshamikam2017-11-07 15:59:48 +0530
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+function y = medfilt1(x, varargin)
+ // 1D median filtering
+ //
+ // Calling sequence
+ // y = medfilt1(x)
+ // y = medfilt1(x, n)
+ // y = medfilt1(x, n, dim)
+ // y = medfitl1(__, nanflag, padding)
+ //
+ // Description
+ // y = medfilt1(x)
+ // Applies a 3rd order 1-dimensional median filter to input x along the
+ // first non-zero dimension. The function appropriately pads the signal
+ // with zeros at the endings. For a segment, a median is calculated as
+ // the middle value (average of two middle values) for odd number
+ // number (even number) of data points.
+ // y = medfilt1(x,n)
+ // Applies a nth order 1-dimensional median filter.
+ // y = medfilt1(x,n,dim)
+ // Applies the median filter along the n-th dimension
+ // y = medfilt1(__, nanflag, padding)
+ // nanflag specifies how NaN values are treated. padding specifies the
+ // type of filtering to be performed at the signal edges.
+ //
+ // Parameters
+ // x: int | double
+ // Input signal.
+ // n: positive integer scalar
+ // Filter order.
+ // Defaults to 3.The order of the median filter. Must be less than
+ // (length of the signal) where signals are 1D vectors along the
+ // dimension of x to be filtered
+ // dim: positive integer scalar
+ // Dimension to filter along.
+ // Defaults to first non-singleton dimension of x
+ // nanflag: 'includenan' (default) | 'omitnan'
+ // NaN condition.
+ // * includenan: Filtering such that the median of any segment
+ // containing a NaN is also a NaN.
+ // * omitnan: Filtering with NaNs omitted in each segment. If a segment
+ // contains all NaNs, the result is NaN
+ // y: int | double
+ // The filtered signal.
+ // y has the same size as x
+ //
+ // Examples
+ // 1) Noise supression using median filtering
+ // fs = 1e3;
+ // t = 1:1/fs:1;
+ // s = sin(2*%pi*2*t)+ cos(2*%pi*5*t);
+ // // Adding noise
+ // x = s + 0.1*randn(size(s));
+ // y = medfilt1(x);
+ //
+ // See also
+ // filter | hampel | median | sgolayfilt
+ //
+ // Authors
+ // Ayush Baid
+
+
+
+ // *************************************************************************
+ // Checking number of arguments
+ // *************************************************************************
+ [numOutArgs, numInArgs] = argn(0);
+
+ if numInArgs<1 | numInArgs>5 then
+ msg = "medfilt1: Wrong number of input argument; 1-5 expected";
+ error(77, msg);
+ end
+ if numOutArgs~=1 then
+ msg = "medfilt1: Wrong number of output argument; 1 expected";
+ error(78, msg);
+ end
+
+
+
+ // *************************************************************************
+ // Parsing input arguments
+ // *************************************************************************
+
+ // * Parsing x *
+ temp = x(:);
+ if type(temp)~=1 & type(temp)~=8 then
+ msg = "medfilt1: Wrong type for argument #1 (x): Int/double expected"
+ error(53, msg);
+ end
+
+
+ // * Parsing nanflag and padding *
+ // Getting all the string arguments
+ stringIndices = list();
+ for i=1:length(varargin);
+ e = varargin(i);
+ if type(e)==10 then
+ stringIndices($+1)=i;
+ end
+ end
+
+ nanflag = %f; // 0->includenan (default); 1->omitnan
+ padflag = %t; // 1->zeropad (default); 0->truncate
+ if ~isempty(stringIndices) then
+ // checking for 'omitnan'
+ if or(strcmpi(varargin(stringIndices), 'omitnan')) then
+ nanflag = %t;
+ end
+
+ // checking for 'truncate'
+ if or(strcmpi(varargin(stringIndices), 'truncate')) then
+ padflag = %f;
+ end
+ varargin(stringIndices) = [];
+ end
+
+
+ // setting default value for n and dim
+ n = 3;
+ dim = 1;
+ L = length(size(x));
+ for i=1:L
+ if size(x, i)>1 then
+ dim = i;
+ end
+ end
+
+ // * Parsing n and dim *
+ if length(varargin)==1 then
+ if ~isempty(varargin(1)) then
+ n = varargin(1);
+ end
+ elseif length(varargin)==2 then
+ if ~isempty(varargin(1)) then
+ n = varargin(1);
+ end
+ if ~isempty(varargin(2)) then
+ dim = varargin(2);
+ end
+ else
+ msg = "medfilt1: Wrong type of input arguments; Atmost 3 numerical input expected";
+ error(53, msg);
+ end
+
+ // check on n
+ if length(n)~=1 then
+ msg = "medfilt1: Wrong size for argument #2 (n): Scalar expected";
+ error(60,msg);
+ end
+
+ if type(n)~=1 & type(n)~=8 then
+ msg = "medfilt1: Wrong type for argument #2 (n): Natural number expected";
+ error(53,msg);
+ end
+
+ if n~=round(n) | n<=0 then
+ msg = "medfilt1: Wrong type for argument #2 (n): Natural number expected";
+ error(53,msg);
+ end
+
+ if ~isreal(n) then
+ msg = "medfilt1: Wrong type for argument #2 (n): Real scalar expected";
+ error(53,msg);
+ end
+
+ // check on dim
+ if length(dim)~=1 then
+ msg = "medfilt1: Wrong size for argument #3 (dim): Scalar expected";
+ error(60,msg);
+ end
+
+ if type(dim)~=1 & type(dim)~=8 then
+ msg = "medfilt1: Wrong type for argument #3 (dim): Natural number expected";
+ error(53,msg);
+ end
+
+ if dim~=round(dim) | dim<=0 then
+ msg = "medfilt1: Wrong type for argument #3 (dim): Natural number expected";
+ error(53,msg);
+ end
+
+ if ~isreal(dim) then
+ msg = "medfilt1: Wrong type for argument #3 (dim): Real scalar expected";
+ error(53,msg);
+ end
+
+
+ // *************************************************************************
+ // Processing for median filtering column by column
+ // *************************************************************************
+
+ inp_size = size(x);
+
+
+ // Permuting x to bring the dimension to be acted upon as the first dimesnion
+ perm_vec = [2:dim, 1, dim+1:length(inp_size)];
+ reverse_perm_vec = [dim, 1:dim-1, dim+1:length(inp_size)];
+ x = permute(x, perm_vec);
+
+ size_vec = size(x);
+
+ y = x; // just initialization
+
+ for i=1:prod(size_vec(2:$))
+ temp = medfilt_colvector(x(:,i), n, padflag, nanflag);
+ y(:,i) = temp;
+ end
+
+
+
+ y = permute(y, reverse_perm_vec);
+
+
+endfunction
+
+function med = medfilt_colvector(x, n, zeropadflag, nanflag)
+ // Performs median filtering (of order n) on a column vector (x)
+ // zeropadflag -> zero pad instead of truncation
+ // nanflag -> discard all blocks containing nan, else do not consider nan values
+
+ med = zeros(size(x,1),1);
+ disp('here1');
+
+
+ // ** zero pad the signal **
+ pad_length = floor(n/2); // padding on a size
+ x = [zeros(pad_length,1); x; zeros(pad_length,1)];
+
+ nx = length(x);
+
+ // Arrange data in blocks
+ top_row = 1:(nx-n);
+
+ idx = zeros(n,length(top_row));
+
+ for i=1:n
+ idx(i,:) = top_row + (i-1);
+ end
+
+ blocks = matrix(x(idx), size(idx));
+
+
+ if nanflag then
+ disp('here2');
+ med = median(blocks, 1)';
+
+ // set result of all the blocks containing nan to nan
+ nanpresent = or(isnan(blocks), 1);
+ med(nanpresent) = %nan;
+ else
+ disp('here3');
+ // we have to neglect nans
+ sorted_blocks = gsort(blocks, 'r', 'i');
+
+ // get the count of non-nan elements
+ num_elems = n - sum(isnan(sorted_blocks), 1);
+
+ // find the median
+ offset = (0:size(blocks,2)-1)*size(blocks,1);
+ idx1 = offset+ceil(num_elems/2);
+ idx2 = offset+ceil((num_elems/2)+0.25);
+
+
+ // temporarily setting idx1 to 1 so as to not give errors in median calc.
+ // Will later replace values at such indices with Nan
+ idx1(idx1==0)=1;
+ med = (sorted_blocks(idx1) + sorted_blocks(idx2))./2;
+
+ med(idx1==0) = %nan;
+ end
+
+ if ~zeropadflag then
+ // ** recalculate boundary blocks with truncation truncate at the boundaries **
+
+ // divide the input signal into 3 parts; 1st and last part have truncation
+ for i=ceil(n/2):n
+ // ** first part **
+ block = x(1:i);
+
+ // * median calc for a block *
+ if nanflag then
+ med(i-ceil(n/2)+1) = median(block, 1);
+
+ // set result of all the blocks containing nan to nan
+ nanpresent = or(isnan(block), 1);
+ if nanpresent then
+ med(i-ceil(n/2)+1) = %nan;
+ end
+ else
+ // we have to neglect nans
+ sorted_block = gsort(block, 'r', 'i');
+
+ // get the count of non-nan elements
+ num_elems = length(block) - sum(isnan(sorted_block), 1);
+
+ // find the median
+ idx1 = ceil(num_elems/2);
+ idx2 = ceil(num_elems/2+0.25);
+
+
+ // temporarily setting idx1 to 1 so as to not give errors in median calc.
+ // Will later replace values at such indices with Nan
+ if idx1==0 then
+ med(i-ceil(n/2)+1) = %nan;
+ else
+ med(i-ceil(n/2)+1) = (sorted_block(idx1, :)+sorted_block(idx2, :))./2;
+ end
+ end
+
+
+ // ** last part **
+ block = x($:-1:$-i);
+
+ // * median calc for a block *
+ if nanflag then
+ med($+ceil(n/2)-i) = median(block, 1);
+
+ // set result of all the blocks containing nan to nan
+ nanpresent = or(isnan(block), 1);
+ if nanpresent then
+ med($-ceil(n/2)+i) = %nan;
+ end
+ med($+ceil(n/2)-i) = %nan;
+ else
+ // we have to neglect nans
+ sorted_block = gsort(block, 'r', 'i');
+
+ // get the count of non-nan elements
+ num_elems = length(block) - sum(isnan(sorted_block), 1);
+
+ // find the median
+ idx1 = ceil(num_elems/2);
+ idx2 = ceil(num_elems/2+0.25);
+
+ // temporarily setting idx1 to 1 so as to not give errors in median calc.
+ // Will later replace values at such indices with Nan
+ if idx1==0 then
+ med($+ceil(n/2)-i) = %nan;
+ else
+ med($+ceil(n/2)-i) = (sorted_block(idx1) + sorted_block(idx2))./2;
+ end
+ end
+ end
+ end
+
+endfunction